PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G178000.1
Common NameB456_006G178000, LOC105799894
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 301aa    MW: 32723.1 Da    PI: 9.2419
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G178000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.63.2e-143983147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        r +WT+eE++++++a +++  + Wk+I   +g  +t  q++s+ qky
  Gorai.006G178000.1 39 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 83
                        789*****************77.*********.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.27E-173389IPR009057Homeodomain-like
PROSITE profilePS5129416.2913488IPR017930Myb domain
TIGRFAMsTIGR015579.0E-193786IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.8E-73789IPR009057Homeodomain-like
SMARTSM007171.1E-113886IPR001005SANT/Myb domain
PfamPF002497.2E-123983IPR001005SANT/Myb domain
CDDcd001672.33E-94184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0032922Biological Processcircadian regulation of gene expression
GO:0043966Biological Processhistone H3 acetylation
GO:0046686Biological Processresponse to cadmium ion
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MNSSPNPPQP PPPQSSTSTT ATDGSGKKVR KPYTITKSRE SWTEEEHDKF LEALQLFDRD  60
WKKIEDFVGS KTVIQIRSHA QKYFLKVQKN GTIAHVPPPR PKRKAAHPYP QKASKNAVLV  120
PLQASMGYPS SINTIAPGYA PWDEASMLVN TASSKIMSPQ DEFTGLRGTE ANIGSKGVAK  180
ISNSGVSGIG SSGQTISNSD MSKQGKQASM LHGIPDFAEV YSFIGSVFDP DTDGHVQKLK  240
EMDPINFETV LLLMRNLTVN LCSPDFEPIR KVLSSYDVGT NTVGVTKGII PQNQMNDILC  300
*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00338DAPTransfer from AT3G09600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486160.10.0PREDICTED: protein REVEILLE 8-like isoform X1
SwissprotQ8RWU31e-145RVE8_ARATH; Protein REVEILLE 8
TrEMBLA0A0D2RY310.0A0A0D2RY31_G
STRINGPOPTR_0006s13530.11e-156(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93032633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.11e-115MYB_related family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]